Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 MIR574-201ENST00000385209 96 ntBASIC17.63■□□□□ 0.41
VPS28Q9UK41 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AC009947.1-201ENST00000444350 727 ntBASIC17.63■□□□□ 0.41
VPS28Q9UK41 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 KRT18P58-201ENST00000527480 1120 ntBASIC17.63■□□□□ 0.41
VPS28Q9UK41 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AC034105.1-201ENST00000563488 319 ntBASIC17.63■□□□□ 0.41
VPS28Q9UK41 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AL590787.1-201ENST00000568856 1315 ntBASIC17.63■□□□□ 0.41
VPS28Q9UK41 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS28Q9UK41 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS28Q9UK41 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 MIR940-201ENST00000401276 94 ntBASIC17.62■□□□□ 0.41
VPS28Q9UK41 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 AC008667.4-201ENST00000607370 168 ntBASIC17.62■□□□□ 0.41
VPS28Q9UK41 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS28Q9UK41 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS28Q9UK41 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 AP002414.1-201ENST00000391405 1147 ntBASIC17.61■□□□□ 0.41
VPS28Q9UK41 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 AC108073.2-201ENST00000464002 357 ntBASIC17.61■□□□□ 0.41
VPS28Q9UK41 IGHV3-65-201ENST00000523210 341 ntBASIC17.61■□□□□ 0.41
VPS28Q9UK41 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 PI4KAP1-204ENST00000612579 1703 ntBASIC17.61■□□□□ 0.41
VPS28Q9UK41 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms