Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SIX4Q9UIU6 KRT8P49-201ENST00000604166 1432 ntBASIC18.23■□□□□ 0.51
SIX4Q9UIU6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 SLC22A20-204ENST00000530038 1673 ntBASIC18.23■□□□□ 0.51
SIX4Q9UIU6 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 AC004877.2-201ENST00000623941 599 ntBASIC18.23■□□□□ 0.51
SIX4Q9UIU6 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SIX4Q9UIU6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 KRT19P2-202ENST00000557173 1012 ntBASIC18.22■□□□□ 0.51
SIX4Q9UIU6 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SIX4Q9UIU6 PCDHB17P-201ENST00000539533 2393 ntBASIC18.22■□□□□ 0.51
SIX4Q9UIU6 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 AC040169.1-201ENST00000565382 521 ntBASIC18.21■□□□□ 0.51
SIX4Q9UIU6 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX4Q9UIU6 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms