Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 ACTG1P4-201ENST00000425123 1122 ntBASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 AC051619.7-201ENST00000568314 623 ntBASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 ABALON-201ENST00000629058 1903 ntBASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIMD1Q9UGP4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 TFAMP1-201ENST00000412727 736 ntBASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 FAM58DP-201ENST00000428076 619 ntBASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 AC099522.2-201ENST00000607001 744 ntBASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMD1Q9UGP4 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 PKD1P1-201ENST00000458669 6805 ntBASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMD1Q9UGP4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 MYCLP1-201ENST00000372451 1075 ntBASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 MIR661-201ENST00000384842 89 ntBASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 UGT1A2P-201ENST00000454886 866 ntBASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AC079140.1-201ENST00000508039 487 ntBASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMD1Q9UGP4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMD1Q9UGP4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms