Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TM9SF3Q9HD45 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 ACTG1P14-201ENST00000446382 1122 ntBASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 CXCL1P1-201ENST00000502804 216 ntBASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AC027612.4-201ENST00000605371 583 ntBASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AC091812.2-201ENST00000619081 385 ntBASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AL645608.8-201ENST00000606034 2086 ntBASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 AL590787.1-201ENST00000568856 1315 ntBASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
TM9SF3Q9HD45 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 AC141586.5-201ENST00000624546 2050 ntBASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 KRT18P55-202ENST00000578578 1546 ntBASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TM9SF3Q9HD45 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
TM9SF3Q9HD45 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms