Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LINC02199-201ENST00000506655 2702 ntBASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AP003733.1-201ENST00000491725 852 ntBASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AC079602.3-201ENST00000623931 403 ntBASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 LYSMD4-203ENST00000378904 2122 ntBASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CHMP1AQ9HD42 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 AL603756.1-201ENST00000606511 2163 ntBASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 DUT-205ENST00000558813 769 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 AC145285.6-201ENST00000604632 637 ntBASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 AC103702.1-201ENST00000548801 2630 ntBASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.8□□□□□ -0.04
CHMP1AQ9HD42 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms