Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 CROCCP2-202ENST00000412962 2773 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 IGHV3-65-201ENST00000523210 341 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 SLC25A1P1-201ENST00000528351 927 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 AC106730.1-201ENST00000566722 1090 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 Z83851.2-201ENST00000609564 659 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 GGTLC5P-201ENST00000617623 998 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 AC093525.9-201ENST00000624961 1746 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 AC116353.5-201ENST00000638148 1699 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 ZNF259P1-201ENST00000407656 1365 ntBASIC17■□□□□ 0.31
TRIM39Q9HCM9 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TRIM39Q9HCM9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRIM39Q9HCM9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 PRORSD1P-202ENST00000563365 2154 ntBASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 AC104109.2-201ENST00000602919 1418 ntBASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 TERC-201ENST00000602385 541 ntBASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRIM39Q9HCM9 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 AC009947.1-201ENST00000444350 727 ntBASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRIM39Q9HCM9 PI4KAP1-204ENST00000612579 1703 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms