Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
MMP28Q9H239 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC15.19■□□□□ 0.02
MMP28Q9H239 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.18■□□□□ 0.02
MMP28Q9H239 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.18■□□□□ 0.02
MMP28Q9H239 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.18■□□□□ 0.02
MMP28Q9H239 AC034236.2-201ENST00000606662 1610 ntBASIC15.18■□□□□ 0.02
MMP28Q9H239 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
MMP28Q9H239 REXO1L11P-201ENST00000620964 1927 ntBASIC15.18■□□□□ 0.02
MMP28Q9H239 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
MMP28Q9H239 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
MMP28Q9H239 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 AL137013.1-201ENST00000432946 1228 ntBASIC15.18■□□□□ 0.02
MMP28Q9H239 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.18■□□□□ 0.02
MMP28Q9H239 WWOX-216ENST00000569818 525 ntBASIC15.18■□□□□ 0.02
MMP28Q9H239 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.18■□□□□ 0.02
MMP28Q9H239 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 FAM87A-204ENST00000613235 858 ntBASIC15.18■□□□□ 0.02
MMP28Q9H239 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
MMP28Q9H239 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.18■□□□□ 0.02
MMP28Q9H239 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.18■□□□□ 0.02
MMP28Q9H239 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.18■□□□□ 0.02
MMP28Q9H239 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.18■□□□□ 0.02
MMP28Q9H239 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.18■□□□□ 0.02
MMP28Q9H239 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MMP28Q9H239 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
MMP28Q9H239 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 AC046185.3-201ENST00000623228 1824 ntBASIC15.17■□□□□ 0.02
MMP28Q9H239 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
MMP28Q9H239 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 AC009102.3-201ENST00000623118 1491 ntBASIC15.17■□□□□ 0.02
MMP28Q9H239 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC15.17■□□□□ 0.02
MMP28Q9H239 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.17■□□□□ 0.02
MMP28Q9H239 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
MMP28Q9H239 LINC01451-201ENST00000623792 534 ntBASIC15.17■□□□□ 0.02
MMP28Q9H239 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MMP28Q9H239 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
MMP28Q9H239 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.17■□□□□ 0.02
MMP28Q9H239 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
MMP28Q9H239 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
MMP28Q9H239 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
MMP28Q9H239 AC126177.1-201ENST00000547829 2218 ntBASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms