Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 TSSC2-201ENST00000450217 709 ntBASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 AC096582.2-201ENST00000510860 516 ntBASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 TPSP2-201ENST00000561760 610 ntBASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 BNIP3P18-201ENST00000593976 575 ntBASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 INTS4P1-201ENST00000438455 1935 ntBASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 TOB2P1-201ENST00000469761 992 ntBASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4AQ8WYN0 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
ATG4AQ8WYN0 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 RCN1P2-201ENST00000398357 915 ntBASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 MINOS1P3-201ENST00000457048 203 ntBASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 AC116407.4-201ENST00000623319 1061 ntBASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 NSUN5P1-202ENST00000421140 1535 ntBASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 NSUN5P2-203ENST00000457352 1529 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms