Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 RNPS1P1-201ENST00000507437 918 ntBASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SYNE3Q6ZMZ3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 AD000864.1-201ENST00000624076 2295 ntBASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 AC025062.2-201ENST00000605477 670 ntBASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 GPR89P-201ENST00000407924 1495 ntBASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SYNE3Q6ZMZ3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 AC009053.2-201ENST00000563701 2365 ntBASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 AC079781.3-201ENST00000449110 356 ntBASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 OR7E14P-202ENST00000530490 1290 ntBASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 AL353135.1-201ENST00000606729 504 ntBASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SYNE3Q6ZMZ3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 RPS2P28-201ENST00000314255 741 ntBASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 LAGE3P1-201ENST00000425356 484 ntBASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AL139424.1-201ENST00000607572 797 ntBASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AL031008.1-201ENST00000619963 541 ntBASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 TP73-AS1-207ENST00000624167 988 ntBASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SYNE3Q6ZMZ3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms