Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SPTLC1P1-201ENST00000447199 261 ntBASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AC004790.1-201ENST00000612686 536 ntBASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 AL031055.1-201ENST00000606362 631 ntBASIC20.73■□□□□ 0.91
CCDC88AQ3V6T2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC88AQ3V6T2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 DGCR5-201ENST00000399539 862 ntBASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 IGHV3-62-201ENST00000520057 340 ntBASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC88AQ3V6T2 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC88AQ3V6T2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC88AQ3V6T2 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 FOXO1B-201ENST00000504678 1527 ntBASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 AC119751.2-201ENST00000504529 210 ntBASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 MIR3909-201ENST00000579518 119 ntBASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC88AQ3V6T2 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC88AQ3V6T2 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms