Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SF3A1Q15459 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SF3A1Q15459 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.83■□□□□ 0.76
SF3A1Q15459 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SF3A1Q15459 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SF3A1Q15459 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.83■□□□□ 0.76
SF3A1Q15459 AGGF1P2-201ENST00000426656 2106 ntBASIC19.82■□□□□ 0.76
SF3A1Q15459 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.82■□□□□ 0.76
SF3A1Q15459 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
SF3A1Q15459 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 AL135999.2-201ENST00000622438 1686 ntBASIC19.82■□□□□ 0.76
SF3A1Q15459 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.82■□□□□ 0.76
SF3A1Q15459 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.82■□□□□ 0.76
SF3A1Q15459 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.82■□□□□ 0.76
SF3A1Q15459 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SF3A1Q15459 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.82■□□□□ 0.76
SF3A1Q15459 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 AC096582.2-201ENST00000510860 516 ntBASIC19.82■□□□□ 0.76
SF3A1Q15459 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.82■□□□□ 0.76
SF3A1Q15459 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SF3A1Q15459 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SF3A1Q15459 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.82■□□□□ 0.76
SF3A1Q15459 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SF3A1Q15459 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.81■□□□□ 0.76
SF3A1Q15459 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
SF3A1Q15459 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.81■□□□□ 0.76
SF3A1Q15459 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.81■□□□□ 0.76
SF3A1Q15459 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.81■□□□□ 0.76
SF3A1Q15459 AC074051.2-201ENST00000565115 352 ntBASIC19.81■□□□□ 0.76
SF3A1Q15459 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.81■□□□□ 0.76
SF3A1Q15459 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.81■□□□□ 0.76
SF3A1Q15459 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SF3A1Q15459 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.81■□□□□ 0.76
SF3A1Q15459 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.81■□□□□ 0.76
SF3A1Q15459 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SF3A1Q15459 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
SF3A1Q15459 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.81■□□□□ 0.76
SF3A1Q15459 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SF3A1Q15459 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SF3A1Q15459 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SF3A1Q15459 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SF3A1Q15459 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SF3A1Q15459 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.8■□□□□ 0.76
SF3A1Q15459 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.8■□□□□ 0.76
SF3A1Q15459 AC073592.5-201ENST00000624854 528 ntBASIC19.8■□□□□ 0.76
SF3A1Q15459 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SF3A1Q15459 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 AL118508.1-201ENST00000613502 2345 ntBASIC19.8■□□□□ 0.76
SF3A1Q15459 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.8■□□□□ 0.76
SF3A1Q15459 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SF3A1Q15459 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms