Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
EPHB3P54753 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 AL355306.1-201ENST00000415580 579 ntBASIC17.82■□□□□ 0.44
EPHB3P54753 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.82■□□□□ 0.44
EPHB3P54753 SPDYE11-202ENST00000450699 704 ntBASIC17.82■□□□□ 0.44
EPHB3P54753 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.82■□□□□ 0.44
EPHB3P54753 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
EPHB3P54753 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.82■□□□□ 0.44
EPHB3P54753 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.82■□□□□ 0.44
EPHB3P54753 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
EPHB3P54753 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.82■□□□□ 0.44
EPHB3P54753 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.82■□□□□ 0.44
EPHB3P54753 SPDYE9P-201ENST00000570642 692 ntBASIC17.82■□□□□ 0.44
EPHB3P54753 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.82■□□□□ 0.44
EPHB3P54753 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 SPDYE10P-202ENST00000612005 668 ntBASIC17.82■□□□□ 0.44
EPHB3P54753 SPDYE8P-202ENST00000612377 668 ntBASIC17.82■□□□□ 0.44
EPHB3P54753 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.82■□□□□ 0.44
EPHB3P54753 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
EPHB3P54753 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.82■□□□□ 0.44
EPHB3P54753 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.82■□□□□ 0.44
EPHB3P54753 AL353732.1-201ENST00000569618 1459 ntBASIC17.82■□□□□ 0.44
EPHB3P54753 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
EPHB3P54753 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
EPHB3P54753 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
EPHB3P54753 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 AC093525.9-201ENST00000624961 1746 ntBASIC17.81■□□□□ 0.44
EPHB3P54753 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
EPHB3P54753 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 HMGA1P7-201ENST00000406908 502 ntBASIC17.81■□□□□ 0.44
EPHB3P54753 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.81■□□□□ 0.44
EPHB3P54753 ADH5P3-201ENST00000433842 1137 ntBASIC17.81■□□□□ 0.44
EPHB3P54753 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.81■□□□□ 0.44
EPHB3P54753 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
EPHB3P54753 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.81■□□□□ 0.44
EPHB3P54753 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.81■□□□□ 0.44
EPHB3P54753 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.81■□□□□ 0.44
EPHB3P54753 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 AC099522.2-201ENST00000607001 744 ntBASIC17.81■□□□□ 0.44
EPHB3P54753 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 AC106028.4-201ENST00000614509 607 ntBASIC17.81■□□□□ 0.44
EPHB3P54753 AC093028.1-201ENST00000622998 982 ntBASIC17.81■□□□□ 0.44
EPHB3P54753 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.81■□□□□ 0.44
EPHB3P54753 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.81■□□□□ 0.44
EPHB3P54753 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
EPHB3P54753 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.81■□□□□ 0.44
EPHB3P54753 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
EPHB3P54753 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.8■□□□□ 0.44
EPHB3P54753 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.8■□□□□ 0.44
EPHB3P54753 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
EPHB3P54753 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 AL139400.1-201ENST00000366220 510 ntBASIC17.8■□□□□ 0.44
EPHB3P54753 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 AC023141.5-201ENST00000458585 616 ntBASIC17.8■□□□□ 0.44
EPHB3P54753 RN7SL589P-201ENST00000481268 310 ntBASIC17.8■□□□□ 0.44
EPHB3P54753 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.8■□□□□ 0.44
EPHB3P54753 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.8■□□□□ 0.44
EPHB3P54753 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.8■□□□□ 0.44
EPHB3P54753 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 AL161645.1-201ENST00000622716 1255 ntBASIC17.8■□□□□ 0.44
EPHB3P54753 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.8■□□□□ 0.44
EPHB3P54753 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.8■□□□□ 0.44
EPHB3P54753 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms