Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.12■□□□□ 0.49
COL4A4P53420 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.12■□□□□ 0.49
COL4A4P53420 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL4A4P53420 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A4P53420 AC073592.8-201ENST00000624126 511 ntBASIC18.12■□□□□ 0.49
COL4A4P53420 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
COL4A4P53420 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL4A4P53420 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A4P53420 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A4P53420 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
COL4A4P53420 PIN1P1-201ENST00000412108 996 ntBASIC18.12■□□□□ 0.49
COL4A4P53420 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A4P53420 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL4A4P53420 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.12■□□□□ 0.49
COL4A4P53420 CU639417.3-201ENST00000624240 1404 ntBASIC18.12■□□□□ 0.49
COL4A4P53420 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A4P53420 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A4P53420 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A4P53420 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A4P53420 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A4P53420 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A4P53420 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A4P53420 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A4P53420 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A4P53420 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A4P53420 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A4P53420 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A4P53420 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.11■□□□□ 0.49
COL4A4P53420 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A4P53420 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A4P53420 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A4P53420 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
COL4A4P53420 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
COL4A4P53420 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A4P53420 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A4P53420 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A4P53420 KRT8P23-201ENST00000560090 1207 ntBASIC18.1■□□□□ 0.49
COL4A4P53420 AP000842.3-202ENST00000569238 1080 ntBASIC18.1■□□□□ 0.49
COL4A4P53420 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
COL4A4P53420 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL4A4P53420 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A4P53420 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL4A4P53420 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A4P53420 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
COL4A4P53420 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.09■□□□□ 0.49
COL4A4P53420 KRT17P7-201ENST00000451704 1104 ntBASIC18.09■□□□□ 0.49
COL4A4P53420 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL4A4P53420 MIR4515-201ENST00000584082 81 ntBASIC18.09■□□□□ 0.49
COL4A4P53420 AL031055.1-201ENST00000606362 631 ntBASIC18.09■□□□□ 0.49
COL4A4P53420 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.09■□□□□ 0.49
COL4A4P53420 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A4P53420 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL4A4P53420 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms