Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MSX2P35548 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
MSX2P35548 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.39■□□□□ 0.22
MSX2P35548 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 AC010460.3-201ENST00000511359 1579 ntBASIC16.39■□□□□ 0.21
MSX2P35548 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 AC005052.1-201ENST00000625181 2492 ntBASIC16.39■□□□□ 0.21
MSX2P35548 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 TSPY7P-201ENST00000431358 1114 ntBASIC16.39■□□□□ 0.21
MSX2P35548 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 UBE2SP1-201ENST00000450587 669 ntBASIC16.39■□□□□ 0.21
MSX2P35548 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 AC002558.1-201ENST00000488906 803 ntBASIC16.39■□□□□ 0.21
MSX2P35548 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 AC124947.2-201ENST00000547118 1133 ntBASIC16.39■□□□□ 0.21
MSX2P35548 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.39■□□□□ 0.21
MSX2P35548 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.39■□□□□ 0.21
MSX2P35548 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.39■□□□□ 0.21
MSX2P35548 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 KRT89P-201ENST00000620027 1478 ntBASIC16.39■□□□□ 0.21
MSX2P35548 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 AL365203.3-201ENST00000609742 2057 ntBASIC16.39■□□□□ 0.21
MSX2P35548 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.39■□□□□ 0.21
MSX2P35548 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.39■□□□□ 0.21
MSX2P35548 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MSX2P35548 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.38■□□□□ 0.21
MSX2P35548 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.38■□□□□ 0.21
MSX2P35548 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
MSX2P35548 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 CYP2D8P-201ENST00000433633 1490 ntBASIC16.38■□□□□ 0.21
MSX2P35548 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 AL645728.1-201ENST00000366221 2101 ntBASIC16.38■□□□□ 0.21
MSX2P35548 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.38■□□□□ 0.21
MSX2P35548 FAM201B-201ENST00000458407 597 ntBASIC16.38■□□□□ 0.21
MSX2P35548 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.38■□□□□ 0.21
MSX2P35548 NEK4P2-201ENST00000580004 1012 ntBASIC16.38■□□□□ 0.21
MSX2P35548 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.38■□□□□ 0.21
MSX2P35548 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 AC079602.3-201ENST00000623931 403 ntBASIC16.38■□□□□ 0.21
MSX2P35548 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.38■□□□□ 0.21
MSX2P35548 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.38■□□□□ 0.21
MSX2P35548 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
MSX2P35548 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
MSX2P35548 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
MSX2P35548 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms