Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG1P18858 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG1P18858 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.76■□□□□ 0.75
LIG1P18858 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIG1P18858 AC012615.1-201ENST00000565797 1299 ntBASIC19.76■□□□□ 0.75
LIG1P18858 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIG1P18858 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LIG1P18858 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG1P18858 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.76■□□□□ 0.75
LIG1P18858 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.76■□□□□ 0.75
LIG1P18858 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.76■□□□□ 0.75
LIG1P18858 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LIG1P18858 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
LIG1P18858 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIG1P18858 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIG1P18858 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
LIG1P18858 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG1P18858 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.75■□□□□ 0.75
LIG1P18858 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG1P18858 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG1P18858 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC19.75■□□□□ 0.75
LIG1P18858 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
LIG1P18858 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LIG1P18858 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
LIG1P18858 NUS1P2-201ENST00000417358 873 ntBASIC19.75■□□□□ 0.75
LIG1P18858 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG1P18858 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.75■□□□□ 0.75
LIG1P18858 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.75■□□□□ 0.75
LIG1P18858 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.75■□□□□ 0.75
LIG1P18858 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
LIG1P18858 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIG1P18858 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
LIG1P18858 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
LIG1P18858 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
LIG1P18858 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 KRT126P-201ENST00000549467 1181 ntBASIC19.74■□□□□ 0.75
LIG1P18858 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 AL732292.2-201ENST00000609649 430 ntBASIC19.74■□□□□ 0.75
LIG1P18858 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.74■□□□□ 0.75
LIG1P18858 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 AL662844.4-201ENST00000606367 2838 ntBASIC19.74■□□□□ 0.75
LIG1P18858 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIG1P18858 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIG1P18858 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIG1P18858 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
LIG1P18858 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms