Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.46■□□□□ 0.23
SEMA3DO95025 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
SEMA3DO95025 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SEMA3DO95025 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SEMA3DO95025 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SEMA3DO95025 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.45■□□□□ 0.22
SEMA3DO95025 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.45■□□□□ 0.22
SEMA3DO95025 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.45■□□□□ 0.22
SEMA3DO95025 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.45■□□□□ 0.22
SEMA3DO95025 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.45■□□□□ 0.22
SEMA3DO95025 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 PRELID1P1-202ENST00000567272 903 ntBASIC16.45■□□□□ 0.22
SEMA3DO95025 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.45■□□□□ 0.22
SEMA3DO95025 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.45■□□□□ 0.22
SEMA3DO95025 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
SEMA3DO95025 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SEMA3DO95025 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SEMA3DO95025 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SEMA3DO95025 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SEMA3DO95025 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.44■□□□□ 0.22
SEMA3DO95025 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 AC068418.2-201ENST00000577309 3703 ntBASIC16.44■□□□□ 0.22
SEMA3DO95025 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SEMA3DO95025 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.44■□□□□ 0.22
SEMA3DO95025 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 AL732292.2-201ENST00000609649 430 ntBASIC16.44■□□□□ 0.22
SEMA3DO95025 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 AC060834.1-201ENST00000443027 2032 ntBASIC16.44■□□□□ 0.22
SEMA3DO95025 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.44■□□□□ 0.22
SEMA3DO95025 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.44■□□□□ 0.22
SEMA3DO95025 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.44■□□□□ 0.22
SEMA3DO95025 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SEMA3DO95025 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SEMA3DO95025 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SEMA3DO95025 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SEMA3DO95025 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.43■□□□□ 0.22
SEMA3DO95025 AC004817.3-201ENST00000602957 2129 ntBASIC16.43■□□□□ 0.22
SEMA3DO95025 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SEMA3DO95025 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.43■□□□□ 0.22
SEMA3DO95025 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.43■□□□□ 0.22
SEMA3DO95025 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.43■□□□□ 0.22
SEMA3DO95025 AC091304.2-201ENST00000564639 760 ntBASIC16.43■□□□□ 0.22
SEMA3DO95025 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.43■□□□□ 0.22
SEMA3DO95025 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms