Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC27.22■■□□□ 1.95
CHD1O14646 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CHD1O14646 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC27.22■■□□□ 1.95
CHD1O14646 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
CHD1O14646 CSF2RBP1-201ENST00000447905 391 ntBASIC27.22■■□□□ 1.95
CHD1O14646 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
CHD1O14646 DERL2-202ENST00000570848 657 ntTSL 5 BASIC27.22■■□□□ 1.95
CHD1O14646 TEX48-202ENST00000612244 662 ntTSL 3 BASIC27.22■■□□□ 1.95
CHD1O14646 AC073439.1-201ENST00000624121 1774 ntBASIC27.22■■□□□ 1.95
CHD1O14646 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC27.22■■□□□ 1.95
CHD1O14646 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
CHD1O14646 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CHD1O14646 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CHD1O14646 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC27.22■■□□□ 1.95
CHD1O14646 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC27.22■■□□□ 1.95
CHD1O14646 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC27.22■■□□□ 1.95
CHD1O14646 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CHD1O14646 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC27.22■■□□□ 1.95
CHD1O14646 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CHD1O14646 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC27.22■■□□□ 1.95
CHD1O14646 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD1O14646 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 RRP7BP-205ENST00000566851 833 ntBASIC27.21■■□□□ 1.95
CHD1O14646 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC27.21■■□□□ 1.95
CHD1O14646 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD1O14646 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD1O14646 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CHD1O14646 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC27.21■■□□□ 1.95
CHD1O14646 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CHD1O14646 RNA5SP412-201ENST00000516234 123 ntBASIC27.21■■□□□ 1.95
CHD1O14646 C2orf69P2-201ENST00000562032 1123 ntBASIC27.21■■□□□ 1.95
CHD1O14646 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC27.21■■□□□ 1.95
CHD1O14646 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD1O14646 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD1O14646 AC093525.8-201ENST00000624099 1342 ntBASIC27.2■■□□□ 1.95
CHD1O14646 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
CHD1O14646 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CHD1O14646 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
CHD1O14646 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CHD1O14646 AC092337.1-201ENST00000568699 1129 ntBASIC27.2■■□□□ 1.94
CHD1O14646 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC27.2■■□□□ 1.94
CHD1O14646 GOLGA2P9-201ENST00000596977 1937 ntBASIC27.2■■□□□ 1.94
CHD1O14646 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC27.2■■□□□ 1.94
CHD1O14646 CLK3P2-201ENST00000427566 1453 ntBASIC27.2■■□□□ 1.94
CHD1O14646 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CHD1O14646 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC27.2■■□□□ 1.94
CHD1O14646 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CHD1O14646 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CHD1O14646 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
CHD1O14646 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC27.19■■□□□ 1.94
CHD1O14646 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC27.19■■□□□ 1.94
CHD1O14646 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC27.19■■□□□ 1.94
CHD1O14646 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC27.19■■□□□ 1.94
CHD1O14646 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC27.19■■□□□ 1.94
CHD1O14646 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 AC233724.13-201ENST00000598383 410 ntBASIC27.19■■□□□ 1.94
CHD1O14646 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC27.19■■□□□ 1.94
CHD1O14646 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC27.19■■□□□ 1.94
CHD1O14646 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC27.19■■□□□ 1.94
CHD1O14646 KRT18P55-202ENST00000578578 1546 ntBASIC27.19■■□□□ 1.94
CHD1O14646 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC27.19■■□□□ 1.94
CHD1O14646 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC27.19■■□□□ 1.94
CHD1O14646 TOP3BP1-201ENST00000420768 1380 ntBASIC27.19■■□□□ 1.94
CHD1O14646 KRT8P12-202ENST00000472924 1397 ntBASIC27.19■■□□□ 1.94
CHD1O14646 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC27.19■■□□□ 1.94
CHD1O14646 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
CHD1O14646 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 MIR663B-201ENST00000408361 115 ntBASIC27.19■■□□□ 1.94
CHD1O14646 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC27.19■■□□□ 1.94
CHD1O14646 RIT1-205ENST00000539040 919 ntTSL 2 BASIC27.19■■□□□ 1.94
CHD1O14646 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD1O14646 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC27.19■■□□□ 1.94
CHD1O14646 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC27.19■■□□□ 1.94
CHD1O14646 MIR8072-201ENST00000614241 80 ntBASIC27.19■■□□□ 1.94
CHD1O14646 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CHD1O14646 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC27.18■■□□□ 1.94
CHD1O14646 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC27.18■■□□□ 1.94
CHD1O14646 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CHD1O14646 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms