Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXN3O00409 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 AF238378.1-201ENST00000526806 358 ntBASIC18.34■□□□□ 0.53
FOXN3O00409 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXN3O00409 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXN3O00409 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 AC008608.2-201ENST00000606089 416 ntBASIC18.34■□□□□ 0.53
FOXN3O00409 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXN3O00409 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXN3O00409 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXN3O00409 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXN3O00409 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.33■□□□□ 0.53
FOXN3O00409 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
FOXN3O00409 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.33■□□□□ 0.53
FOXN3O00409 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.33■□□□□ 0.53
FOXN3O00409 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
FOXN3O00409 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
FOXN3O00409 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXN3O00409 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.33■□□□□ 0.53
FOXN3O00409 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXN3O00409 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
FOXN3O00409 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
FOXN3O00409 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXN3O00409 AP002414.1-201ENST00000391405 1147 ntBASIC18.33■□□□□ 0.52
FOXN3O00409 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXN3O00409 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.33■□□□□ 0.52
FOXN3O00409 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.52
FOXN3O00409 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.33■□□□□ 0.52
FOXN3O00409 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.33■□□□□ 0.52
FOXN3O00409 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXN3O00409 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXN3O00409 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
FOXN3O00409 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXN3O00409 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXN3O00409 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
FOXN3O00409 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXN3O00409 UBALD1-205ENST00000590891 2641 ntBASIC18.33■□□□□ 0.52
FOXN3O00409 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXN3O00409 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXN3O00409 NCF1C-201ENST00000438382 1427 ntBASIC18.32■□□□□ 0.52
FOXN3O00409 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
FOXN3O00409 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.32■□□□□ 0.52
FOXN3O00409 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 AL118508.1-201ENST00000613502 2345 ntBASIC18.32■□□□□ 0.52
FOXN3O00409 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.32■□□□□ 0.52
FOXN3O00409 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
FOXN3O00409 KRT18P56-201ENST00000507275 550 ntBASIC18.32■□□□□ 0.52
FOXN3O00409 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.32■□□□□ 0.52
FOXN3O00409 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
FOXN3O00409 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
FOXN3O00409 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.32■□□□□ 0.52
FOXN3O00409 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.32■□□□□ 0.52
FOXN3O00409 AL645728.1-201ENST00000366221 2101 ntBASIC18.32■□□□□ 0.52
FOXN3O00409 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
FOXN3O00409 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXN3O00409 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXN3O00409 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.31■□□□□ 0.52
FOXN3O00409 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXN3O00409 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.31■□□□□ 0.52
FOXN3O00409 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
FOXN3O00409 UNC93B7-201ENST00000509439 705 ntBASIC18.31■□□□□ 0.52
FOXN3O00409 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms