Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AC108751.1-201ENST00000490852 363 ntBASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AC064836.3-201ENST00000607928 673 ntBASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 AC004706.3-202ENST00000621574 984 ntBASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDHGA3Q9Y5H0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDHGA3Q9Y5H0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 MST1L-201ENST00000442552 2185 ntBASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 CROCCP1-201ENST00000426910 5675 ntBASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 AC004817.3-201ENST00000602957 2129 ntBASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.72■□□□□ 0.27
PCDHGA3Q9Y5H0 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms