Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CUEDC1Q9NWM3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 AC099398.1-201ENST00000567919 2776 ntBASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 SLC25A1P1-201ENST00000528351 927 ntBASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 AC139887.3-201ENST00000568585 713 ntBASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 AL353135.1-201ENST00000606729 504 ntBASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 AL589182.2-201ENST00000619332 1049 ntBASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 AP001094.4-201ENST00000579008 2176 ntBASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.61■□□□□ 0.25
CUEDC1Q9NWM3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AL031284.1-201ENST00000419297 478 ntBASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 LAGE3P1-201ENST00000425356 484 ntBASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AL049840.3-201ENST00000602669 611 ntBASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 AL139424.1-201ENST00000607572 797 ntBASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 EGFEM1P-202ENST00000431685 1563 ntBASIC16.6■□□□□ 0.25
CUEDC1Q9NWM3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.59■□□□□ 0.25
CUEDC1Q9NWM3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms