Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 AP002383.4-201ENST00000442518 975 ntBASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 AL358472.4-201ENST00000633140 710 ntBASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRIM56Q9BRZ2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 AC122714.2-201ENST00000502787 707 ntBASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 IGHV3-52-201ENST00000519770 353 ntBASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRIM56Q9BRZ2 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 PCDHB19P-201ENST00000570871 2371 ntBASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 CHCHD2P8-201ENST00000429873 447 ntBASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 BX276092.5-203ENST00000456199 560 ntBASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 STK25P1-201ENST00000585406 838 ntBASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 AC116407.4-201ENST00000623319 1061 ntBASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.52■□□□□ 0.4
TRIM56Q9BRZ2 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM56Q9BRZ2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM56Q9BRZ2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.52■□□□□ 0.39
TRIM56Q9BRZ2 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRIM56Q9BRZ2 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
TRIM56Q9BRZ2 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms