Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.2■□□□□ 0.5
PAAF1Q9BRP4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.2■□□□□ 0.5
PAAF1Q9BRP4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PAAF1Q9BRP4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PAAF1Q9BRP4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.2■□□□□ 0.5
PAAF1Q9BRP4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 AC002056.1-201ENST00000395613 760 ntBASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 TSEN15P1-201ENST00000423257 515 ntBASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 AC093520.2-201ENST00000561830 333 ntBASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 AC004835.2-201ENST00000603762 682 ntBASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PAAF1Q9BRP4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 TIMM8BP1-201ENST00000452384 211 ntBASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 CYMP-203ENST00000474680 1263 ntBASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 FRMD8P1-201ENST00000440433 1524 ntBASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.18■□□□□ 0.5
PAAF1Q9BRP4 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 AL671277.1-201ENST00000429656 993 ntBASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 AC005412.3-201ENST00000580309 715 ntBASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 AC106028.4-201ENST00000614509 607 ntBASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 AC012569.1-201ENST00000591191 1524 ntBASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PAAF1Q9BRP4 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms