Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 NCF1C-201ENST00000438382 1427 ntBASIC20.19■□□□□ 0.82
BRF1Q92994 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.18■□□□□ 0.82
BRF1Q92994 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.18■□□□□ 0.82
BRF1Q92994 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BRF1Q92994 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.18■□□□□ 0.82
BRF1Q92994 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BRF1Q92994 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
BRF1Q92994 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
BRF1Q92994 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.18■□□□□ 0.82
BRF1Q92994 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.18■□□□□ 0.82
BRF1Q92994 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BRF1Q92994 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.18■□□□□ 0.82
BRF1Q92994 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.18■□□□□ 0.82
BRF1Q92994 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 AL590787.1-201ENST00000568856 1315 ntBASIC20.18■□□□□ 0.82
BRF1Q92994 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.18■□□□□ 0.82
BRF1Q92994 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.18■□□□□ 0.82
BRF1Q92994 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
BRF1Q92994 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
BRF1Q92994 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRF1Q92994 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.17■□□□□ 0.82
BRF1Q92994 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
BRF1Q92994 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRF1Q92994 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
BRF1Q92994 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
BRF1Q92994 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 AC124067.4-201ENST00000519691 2379 ntBASIC20.16■□□□□ 0.82
BRF1Q92994 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
BRF1Q92994 FLJ38576-201ENST00000623820 2459 ntBASIC20.16■□□□□ 0.82
BRF1Q92994 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF1Q92994 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.16■□□□□ 0.82
BRF1Q92994 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
BRF1Q92994 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF1Q92994 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.16■□□□□ 0.82
BRF1Q92994 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
BRF1Q92994 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.16■□□□□ 0.82
BRF1Q92994 EMBP1-201ENST00000458200 901 ntBASIC20.16■□□□□ 0.82
BRF1Q92994 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.16■□□□□ 0.82
BRF1Q92994 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.16■□□□□ 0.82
BRF1Q92994 AC021087.4-201ENST00000563761 564 ntBASIC20.16■□□□□ 0.82
BRF1Q92994 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
BRF1Q92994 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
BRF1Q92994 AC025062.2-201ENST00000605477 670 ntBASIC20.16■□□□□ 0.82
BRF1Q92994 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.16■□□□□ 0.82
BRF1Q92994 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.16■□□□□ 0.82
BRF1Q92994 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.16■□□□□ 0.82
BRF1Q92994 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.16■□□□□ 0.82
BRF1Q92994 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BRF1Q92994 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.15■□□□□ 0.82
BRF1Q92994 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRF1Q92994 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms