Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 AC003669.1-201ENST00000334569 611 ntBASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 VENTXP7-201ENST00000475503 772 ntBASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ATG4AQ8WYN0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 AC233702.3-201ENST00000578656 1387 ntBASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 KRT18P1-202ENST00000452408 1331 ntBASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 GPR89P-201ENST00000407924 1495 ntBASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 AC148477.5-201ENST00000625164 1645 ntBASIC17.8■□□□□ 0.44
ATG4AQ8WYN0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 AP002383.4-201ENST00000442518 975 ntBASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 LINC02199-201ENST00000506655 2702 ntBASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
ATG4AQ8WYN0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.78■□□□□ 0.44
ATG4AQ8WYN0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms