Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CCDC65Q8IXS2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 AC139887.3-201ENST00000568585 713 ntBASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 PCDHA12-202ENST00000613593 2588 ntBASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC65Q8IXS2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 AL590787.1-201ENST00000568856 1315 ntBASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC65Q8IXS2 AC092068.3-201ENST00000587894 2016 ntBASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 AC021087.4-201ENST00000563761 564 ntBASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 AL139424.1-201ENST00000607572 797 ntBASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC65Q8IXS2 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC65Q8IXS2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC65Q8IXS2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC65Q8IXS2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC65Q8IXS2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC65Q8IXS2 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC65Q8IXS2 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms