Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
KRT39Q6A163 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
KRT39Q6A163 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 OR7E14P-202ENST00000530490 1290 ntBASIC18.52■□□□□ 0.56
KRT39Q6A163 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
KRT39Q6A163 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
KRT39Q6A163 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.52■□□□□ 0.56
KRT39Q6A163 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
KRT39Q6A163 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
KRT39Q6A163 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
KRT39Q6A163 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
KRT39Q6A163 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
KRT39Q6A163 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
KRT39Q6A163 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
KRT39Q6A163 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.52■□□□□ 0.55
KRT39Q6A163 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
KRT39Q6A163 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
KRT39Q6A163 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.51■□□□□ 0.55
KRT39Q6A163 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
KRT39Q6A163 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
KRT39Q6A163 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 KRT18P67-201ENST00000432816 1264 ntBASIC18.51■□□□□ 0.55
KRT39Q6A163 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
KRT39Q6A163 AC018712.1-201ENST00000455767 687 ntBASIC18.51■□□□□ 0.55
KRT39Q6A163 AF186996.4-201ENST00000467186 377 ntBASIC18.51■□□□□ 0.55
KRT39Q6A163 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.51■□□□□ 0.55
KRT39Q6A163 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.51■□□□□ 0.55
KRT39Q6A163 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.51■□□□□ 0.55
KRT39Q6A163 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.51■□□□□ 0.55
KRT39Q6A163 AL031008.1-201ENST00000619963 541 ntBASIC18.51■□□□□ 0.55
KRT39Q6A163 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
KRT39Q6A163 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.51■□□□□ 0.55
KRT39Q6A163 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
KRT39Q6A163 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.51■□□□□ 0.55
KRT39Q6A163 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
KRT39Q6A163 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
KRT39Q6A163 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 AC104692.2-201ENST00000603054 253 ntBASIC18.5■□□□□ 0.55
KRT39Q6A163 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.5■□□□□ 0.55
KRT39Q6A163 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 AC243591.1-201ENST00000452967 1364 ntBASIC18.5■□□□□ 0.55
KRT39Q6A163 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.5■□□□□ 0.55
KRT39Q6A163 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
KRT39Q6A163 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.5■□□□□ 0.55
KRT39Q6A163 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms