Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 GPR53P-205ENST00000457298 1084 ntBASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 AC073439.1-201ENST00000624121 1774 ntBASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 PGF-202ENST00000405431 666 ntTSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 IGHV3-42-201ENST00000520410 361 ntBASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 CHCHD2P3-201ENST00000603038 451 ntBASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 AL844908.2-201ENST00000609461 460 ntBASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 AL354751.1-201ENST00000412768 1863 ntBASIC11.36□□□□□ -0.59
VPS13DQ5THJ4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AL133215.2-201ENST00000609242 977 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 ALG1L8P-201ENST00000533887 760 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 KRT17P8-201ENST00000540749 863 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 RARRES2P9-201ENST00000565168 469 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AL590560.3-201ENST00000623350 461 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 HLA-V-204ENST00000476601 1289 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AC007967.4-201ENST00000614700 386 ntBASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
VPS13DQ5THJ4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
VPS13DQ5THJ4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms