Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.46■□□□□ 0.38
USP39Q53GS9 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.46■□□□□ 0.38
USP39Q53GS9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
USP39Q53GS9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
USP39Q53GS9 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
USP39Q53GS9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.45■□□□□ 0.38
USP39Q53GS9 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.45■□□□□ 0.38
USP39Q53GS9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 AC004449.1-201ENST00000564240 433 ntBASIC17.45■□□□□ 0.38
USP39Q53GS9 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.45■□□□□ 0.38
USP39Q53GS9 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.45■□□□□ 0.38
USP39Q53GS9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.45■□□□□ 0.38
USP39Q53GS9 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.45■□□□□ 0.38
USP39Q53GS9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
USP39Q53GS9 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.45■□□□□ 0.38
USP39Q53GS9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USP39Q53GS9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.44■□□□□ 0.38
USP39Q53GS9 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.44■□□□□ 0.38
USP39Q53GS9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.44■□□□□ 0.38
USP39Q53GS9 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.44■□□□□ 0.38
USP39Q53GS9 AC004835.2-201ENST00000603762 682 ntBASIC17.44■□□□□ 0.38
USP39Q53GS9 AC027612.4-201ENST00000605371 583 ntBASIC17.44■□□□□ 0.38
USP39Q53GS9 AL353135.1-201ENST00000606729 504 ntBASIC17.44■□□□□ 0.38
USP39Q53GS9 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
USP39Q53GS9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USP39Q53GS9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
USP39Q53GS9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
USP39Q53GS9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.43■□□□□ 0.38
USP39Q53GS9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
USP39Q53GS9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
USP39Q53GS9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
USP39Q53GS9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP39Q53GS9 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms