Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.88■□□□□ 0.29
PKNOX1P55347 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PKNOX1P55347 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
PKNOX1P55347 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.88■□□□□ 0.29
PKNOX1P55347 AC246785.2-201ENST00000432512 513 ntBASIC16.88■□□□□ 0.29
PKNOX1P55347 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.88■□□□□ 0.29
PKNOX1P55347 KRT8P26-201ENST00000534154 1276 ntBASIC16.88■□□□□ 0.29
PKNOX1P55347 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.88■□□□□ 0.29
PKNOX1P55347 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.88■□□□□ 0.29
PKNOX1P55347 STK25P1-201ENST00000585406 838 ntBASIC16.88■□□□□ 0.29
PKNOX1P55347 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.88■□□□□ 0.29
PKNOX1P55347 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.88■□□□□ 0.29
PKNOX1P55347 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.88■□□□□ 0.29
PKNOX1P55347 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PKNOX1P55347 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.87■□□□□ 0.29
PKNOX1P55347 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PKNOX1P55347 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.87■□□□□ 0.29
PKNOX1P55347 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.87■□□□□ 0.29
PKNOX1P55347 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.87■□□□□ 0.29
PKNOX1P55347 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.87■□□□□ 0.29
PKNOX1P55347 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 AC124947.2-201ENST00000547118 1133 ntBASIC16.87■□□□□ 0.29
PKNOX1P55347 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.87■□□□□ 0.29
PKNOX1P55347 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.87■□□□□ 0.29
PKNOX1P55347 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PKNOX1P55347 KRT8P10-201ENST00000450021 1447 ntBASIC16.87■□□□□ 0.29
PKNOX1P55347 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.87■□□□□ 0.29
PKNOX1P55347 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.86■□□□□ 0.29
PKNOX1P55347 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.86■□□□□ 0.29
PKNOX1P55347 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.86■□□□□ 0.29
PKNOX1P55347 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.86■□□□□ 0.29
PKNOX1P55347 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PKNOX1P55347 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 AC009533.2-201ENST00000543664 586 ntBASIC16.86■□□□□ 0.29
PKNOX1P55347 RN7SL850P-201ENST00000579959 291 ntBASIC16.86■□□□□ 0.29
PKNOX1P55347 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.86■□□□□ 0.29
PKNOX1P55347 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 AC092171.3-201ENST00000610122 2651 ntBASIC16.86■□□□□ 0.29
PKNOX1P55347 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.86■□□□□ 0.29
PKNOX1P55347 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PKNOX1P55347 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKNOX1P55347 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PKNOX1P55347 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.85■□□□□ 0.29
PKNOX1P55347 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKNOX1P55347 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PKNOX1P55347 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKNOX1P55347 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PKNOX1P55347 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.85■□□□□ 0.29
PKNOX1P55347 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PKNOX1P55347 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.85■□□□□ 0.29
PKNOX1P55347 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms