Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LIM2P55344 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.29■□□□□ 0.2
LIM2P55344 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LIM2P55344 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIM2P55344 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.29■□□□□ 0.2
LIM2P55344 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.29■□□□□ 0.2
LIM2P55344 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
LIM2P55344 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.29■□□□□ 0.2
LIM2P55344 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIM2P55344 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIM2P55344 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 LINC02012-201ENST00000608206 1725 ntBASIC16.28■□□□□ 0.2
LIM2P55344 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIM2P55344 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIM2P55344 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIM2P55344 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.28■□□□□ 0.2
LIM2P55344 MRPL3P1-201ENST00000400109 1033 ntBASIC16.28■□□□□ 0.2
LIM2P55344 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIM2P55344 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.28■□□□□ 0.2
LIM2P55344 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.28■□□□□ 0.2
LIM2P55344 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.28■□□□□ 0.2
LIM2P55344 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.28■□□□□ 0.2
LIM2P55344 AL773604.1-201ENST00000617417 272 ntBASIC16.28■□□□□ 0.2
LIM2P55344 AC106886.4-201ENST00000623557 2502 ntBASIC16.28■□□□□ 0.2
LIM2P55344 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
LIM2P55344 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIM2P55344 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIM2P55344 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.28■□□□□ 0.2
LIM2P55344 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.28■□□□□ 0.2
LIM2P55344 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.28■□□□□ 0.2
LIM2P55344 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.28■□□□□ 0.2
LIM2P55344 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIM2P55344 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIM2P55344 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.27■□□□□ 0.2
LIM2P55344 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.27■□□□□ 0.2
LIM2P55344 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 AL590787.1-201ENST00000568856 1315 ntBASIC16.27■□□□□ 0.2
LIM2P55344 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIM2P55344 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIM2P55344 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.27■□□□□ 0.2
LIM2P55344 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.27■□□□□ 0.2
LIM2P55344 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.27■□□□□ 0.2
LIM2P55344 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.27■□□□□ 0.2
LIM2P55344 AC009078.2-202ENST00000463353 338 ntBASIC16.27■□□□□ 0.2
LIM2P55344 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.27■□□□□ 0.2
LIM2P55344 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.27■□□□□ 0.2
LIM2P55344 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.27■□□□□ 0.2
LIM2P55344 AC006557.2-201ENST00000592985 1240 ntBASIC16.27■□□□□ 0.2
LIM2P55344 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.27■□□□□ 0.2
LIM2P55344 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
LIM2P55344 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.27■□□□□ 0.2
LIM2P55344 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 AC060834.1-201ENST00000443027 2032 ntBASIC16.27■□□□□ 0.2
LIM2P55344 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIM2P55344 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIM2P55344 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIM2P55344 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIM2P55344 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.27■□□□□ 0.19
LIM2P55344 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIM2P55344 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
LIM2P55344 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.27■□□□□ 0.19
LIM2P55344 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIM2P55344 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIM2P55344 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 TNRC18P3-201ENST00000441896 2691 ntBASIC16.26■□□□□ 0.19
LIM2P55344 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIM2P55344 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
LIM2P55344 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms