Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LIG3P49916 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIG3P49916 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIG3P49916 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.11■□□□□ 0.49
LIG3P49916 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIG3P49916 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LIG3P49916 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIG3P49916 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.11■□□□□ 0.49
LIG3P49916 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIG3P49916 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LIG3P49916 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIG3P49916 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.11■□□□□ 0.49
LIG3P49916 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIG3P49916 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LIG3P49916 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIG3P49916 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.1■□□□□ 0.49
LIG3P49916 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LIG3P49916 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 DUSP5P1-201ENST00000441325 1139 ntBASIC18.1■□□□□ 0.49
LIG3P49916 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.1■□□□□ 0.49
LIG3P49916 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.1■□□□□ 0.49
LIG3P49916 AC012313.10-201ENST00000623509 926 ntBASIC18.1■□□□□ 0.49
LIG3P49916 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LIG3P49916 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
LIG3P49916 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
LIG3P49916 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
LIG3P49916 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LIG3P49916 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIG3P49916 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.1■□□□□ 0.49
LIG3P49916 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIG3P49916 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LIG3P49916 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.09■□□□□ 0.49
LIG3P49916 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.09■□□□□ 0.49
LIG3P49916 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LIG3P49916 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.09■□□□□ 0.49
LIG3P49916 AC233702.3-201ENST00000578656 1387 ntBASIC18.09■□□□□ 0.49
LIG3P49916 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.09■□□□□ 0.49
LIG3P49916 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.09■□□□□ 0.49
LIG3P49916 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.09■□□□□ 0.49
LIG3P49916 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.09■□□□□ 0.49
LIG3P49916 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.09■□□□□ 0.49
LIG3P49916 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.09■□□□□ 0.49
LIG3P49916 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.09■□□□□ 0.49
LIG3P49916 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.09■□□□□ 0.49
LIG3P49916 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.09■□□□□ 0.49
LIG3P49916 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIG3P49916 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIG3P49916 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIG3P49916 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.08■□□□□ 0.49
LIG3P49916 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
LIG3P49916 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.08■□□□□ 0.49
LIG3P49916 LINC00167-201ENST00000530583 1419 ntBASIC18.08■□□□□ 0.49
LIG3P49916 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.08■□□□□ 0.49
LIG3P49916 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIG3P49916 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.08■□□□□ 0.48
LIG3P49916 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.08■□□□□ 0.48
LIG3P49916 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.08■□□□□ 0.48
LIG3P49916 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIG3P49916 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.08■□□□□ 0.48
LIG3P49916 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms