Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.08□□□□□ -0.15
CDX1P47902 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.08□□□□□ -0.15
CDX1P47902 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.08□□□□□ -0.15
CDX1P47902 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.08□□□□□ -0.15
CDX1P47902 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
CDX1P47902 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
CDX1P47902 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CDX1P47902 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CDX1P47902 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
CDX1P47902 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 AC132872.4-202ENST00000622924 2756 ntBASIC14.08□□□□□ -0.16
CDX1P47902 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CDX1P47902 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CDX1P47902 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.08□□□□□ -0.16
CDX1P47902 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.08□□□□□ -0.16
CDX1P47902 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 NUS1P1-201ENST00000446295 882 ntBASIC14.08□□□□□ -0.16
CDX1P47902 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 VENTXP7-201ENST00000475503 772 ntBASIC14.08□□□□□ -0.16
CDX1P47902 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 AC012615.1-201ENST00000565797 1299 ntBASIC14.08□□□□□ -0.16
CDX1P47902 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.08□□□□□ -0.16
CDX1P47902 AC124864.1-201ENST00000623408 392 ntBASIC14.08□□□□□ -0.16
CDX1P47902 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.08□□□□□ -0.16
CDX1P47902 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 AC106886.4-201ENST00000623557 2502 ntBASIC14.08□□□□□ -0.16
CDX1P47902 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDX1P47902 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC14.08□□□□□ -0.16
CDX1P47902 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CDX1P47902 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CDX1P47902 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.07□□□□□ -0.16
CDX1P47902 LINC00265-3P-201ENST00000447588 903 ntBASIC14.07□□□□□ -0.16
CDX1P47902 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.07□□□□□ -0.16
CDX1P47902 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 Z69720.1-201ENST00000601483 472 ntBASIC14.07□□□□□ -0.16
CDX1P47902 AL592071.1-201ENST00000611956 408 ntBASIC14.07□□□□□ -0.16
CDX1P47902 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CDX1P47902 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CDX1P47902 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 AC105917.1-201ENST00000506637 2539 ntBASIC14.07□□□□□ -0.16
CDX1P47902 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.07□□□□□ -0.16
CDX1P47902 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 AC022188.1-201ENST00000620960 1664 ntBASIC14.07□□□□□ -0.16
CDX1P47902 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.07□□□□□ -0.16
CDX1P47902 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDX1P47902 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
CDX1P47902 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDX1P47902 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms