Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NKAPP1-205ENST00000585790 367 ntBASIC16.2■□□□□ 0.18
SOX3P41225 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX3P41225 AC019129.2-201ENST00000609837 1235 ntBASIC16.2■□□□□ 0.18
SOX3P41225 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX3P41225 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX3P41225 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SOX3P41225 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX3P41225 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX3P41225 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.19■□□□□ 0.18
SOX3P41225 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.19■□□□□ 0.18
SOX3P41225 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 AL353593.2-201ENST00000602529 1483 ntBASIC16.19■□□□□ 0.18
SOX3P41225 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.19■□□□□ 0.18
SOX3P41225 AC018712.1-201ENST00000455767 687 ntBASIC16.19■□□□□ 0.18
SOX3P41225 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 AC021087.4-201ENST00000563761 564 ntBASIC16.19■□□□□ 0.18
SOX3P41225 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SOX3P41225 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX3P41225 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX3P41225 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX3P41225 HLA-A-201ENST00000376802 1334 ntBASIC16.19■□□□□ 0.18
SOX3P41225 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SOX3P41225 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
SOX3P41225 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SOX3P41225 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 BX005266.1-201ENST00000473402 457 ntBASIC16.18■□□□□ 0.18
SOX3P41225 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.18■□□□□ 0.18
SOX3P41225 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.18■□□□□ 0.18
SOX3P41225 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SOX3P41225 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
SOX3P41225 AC079776.2-201ENST00000641154 1609 ntBASIC16.18■□□□□ 0.18
SOX3P41225 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX3P41225 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SOX3P41225 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 AC046158.3-201ENST00000624947 2558 ntBASIC16.18■□□□□ 0.18
SOX3P41225 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX3P41225 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms