Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC136632.2-201ENST00000512891 861 ntBASIC13.3□□□□□ -0.28
HOXD3P31249 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HOXD3P31249 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.3□□□□□ -0.28
HOXD3P31249 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.3□□□□□ -0.28
HOXD3P31249 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.3□□□□□ -0.28
HOXD3P31249 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXD3P31249 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD3P31249 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD3P31249 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
HOXD3P31249 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.29□□□□□ -0.28
HOXD3P31249 ACTG1P4-201ENST00000425123 1122 ntBASIC13.29□□□□□ -0.28
HOXD3P31249 KRT18P27-201ENST00000427733 1299 ntBASIC13.29□□□□□ -0.28
HOXD3P31249 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 MIR4751-201ENST00000578027 74 ntBASIC13.29□□□□□ -0.28
HOXD3P31249 MTDHP5-201ENST00000598980 586 ntBASIC13.29□□□□□ -0.28
HOXD3P31249 AC004706.3-202ENST00000621574 984 ntBASIC13.29□□□□□ -0.28
HOXD3P31249 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.29□□□□□ -0.28
HOXD3P31249 PGM5P2-202ENST00000637225 1043 ntBASIC13.29□□□□□ -0.28
HOXD3P31249 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
HOXD3P31249 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXD3P31249 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXD3P31249 FST-202ENST00000396947 2538 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXD3P31249 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 AL138688.1-201ENST00000624851 1594 ntBASIC13.28□□□□□ -0.28
HOXD3P31249 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 AC073621.1-201ENST00000392730 636 ntBASIC13.28□□□□□ -0.28
HOXD3P31249 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 ELK2BP-201ENST00000415014 1224 ntBASIC13.28□□□□□ -0.28
HOXD3P31249 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXD3P31249 KRT18P2-201ENST00000447938 1258 ntBASIC13.28□□□□□ -0.28
HOXD3P31249 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXD3P31249 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.28□□□□□ -0.28
HOXD3P31249 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXD3P31249 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
HOXD3P31249 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.28□□□□□ -0.28
HOXD3P31249 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXD3P31249 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms