Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.1■□□□□ 0.33
MSH3P20585 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
MSH3P20585 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.1■□□□□ 0.33
MSH3P20585 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.1■□□□□ 0.33
MSH3P20585 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.1■□□□□ 0.33
MSH3P20585 AC018712.1-201ENST00000455767 687 ntBASIC17.1■□□□□ 0.33
MSH3P20585 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
MSH3P20585 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.1■□□□□ 0.33
MSH3P20585 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
MSH3P20585 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.1■□□□□ 0.33
MSH3P20585 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 AC107918.4-202ENST00000641623 219 ntBASIC17.1■□□□□ 0.33
MSH3P20585 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
MSH3P20585 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH3P20585 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH3P20585 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.1■□□□□ 0.33
MSH3P20585 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.09■□□□□ 0.33
MSH3P20585 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
MSH3P20585 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.09■□□□□ 0.33
MSH3P20585 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.09■□□□□ 0.33
MSH3P20585 AC006557.2-201ENST00000592985 1240 ntBASIC17.09■□□□□ 0.33
MSH3P20585 AC148477.8-201ENST00000624298 468 ntBASIC17.09■□□□□ 0.33
MSH3P20585 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MSH3P20585 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MSH3P20585 AC093525.9-201ENST00000624961 1746 ntBASIC17.09■□□□□ 0.33
MSH3P20585 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 AC080080.1-201ENST00000625121 2420 ntBASIC17.09■□□□□ 0.33
MSH3P20585 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH3P20585 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
MSH3P20585 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
MSH3P20585 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSH3P20585 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH3P20585 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSH3P20585 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.08■□□□□ 0.33
MSH3P20585 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSH3P20585 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSH3P20585 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH3P20585 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.08■□□□□ 0.32
MSH3P20585 MRPL3P1-201ENST00000400109 1033 ntBASIC17.08■□□□□ 0.32
MSH3P20585 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.08■□□□□ 0.32
MSH3P20585 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
MSH3P20585 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.08■□□□□ 0.32
MSH3P20585 AC009078.2-202ENST00000463353 338 ntBASIC17.08■□□□□ 0.32
MSH3P20585 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.08■□□□□ 0.32
MSH3P20585 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
MSH3P20585 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.08■□□□□ 0.32
MSH3P20585 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH3P20585 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.08■□□□□ 0.32
MSH3P20585 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.08■□□□□ 0.32
MSH3P20585 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.08■□□□□ 0.32
MSH3P20585 AL139424.1-201ENST00000607572 797 ntBASIC17.08■□□□□ 0.32
MSH3P20585 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
MSH3P20585 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSH3P20585 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
MSH3P20585 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
MSH3P20585 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH3P20585 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH3P20585 AC116353.5-201ENST00000638148 1699 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms