Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
HMGA1P17096 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGA1P17096 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGA1P17096 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 TFAMP1-201ENST00000412727 736 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 AC092474.2-201ENST00000424288 719 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGA1P17096 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGA1P17096 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGA1P17096 AC023141.5-201ENST00000458585 616 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.67■□□□□ 0.42
HMGA1P17096 AC079140.1-201ENST00000508039 487 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 AC109635.5-201ENST00000533593 962 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 RARRES2P8-201ENST00000566335 367 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 MPDU1-223ENST00000582151 728 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGA1P17096 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.67■□□□□ 0.42
HMGA1P17096 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.67■□□□□ 0.42
HMGA1P17096 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.67■□□□□ 0.42
HMGA1P17096 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGA1P17096 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGA1P17096 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGA1P17096 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGA1P17096 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGA1P17096 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
HMGA1P17096 PP12613-201ENST00000424958 2230 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HMGA1P17096 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 AL627223.1-201ENST00000416693 442 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 SPDYE11-202ENST00000450699 704 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGA1P17096 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGA1P17096 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HMGA1P17096 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.66■□□□□ 0.42
HMGA1P17096 AL135744.1-201ENST00000565098 629 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 SPDYE9P-201ENST00000570642 692 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.66■□□□□ 0.42
HMGA1P17096 SPDYE10P-202ENST00000612005 668 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 SPDYE8P-202ENST00000612377 668 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGA1P17096 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGA1P17096 LINC02012-201ENST00000608206 1725 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.66■□□□□ 0.42
HMGA1P17096 AKAP8P1-201ENST00000434743 1349 ntBASIC17.66■□□□□ 0.42
HMGA1P17096 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HMGA1P17096 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HMGA1P17096 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HMGA1P17096 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HMGA1P17096 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HMGA1P17096 KRT8P49-201ENST00000604166 1432 ntBASIC17.65■□□□□ 0.42
HMGA1P17096 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 LINC00896-202ENST00000609602 2128 ntBASIC17.65■□□□□ 0.42
HMGA1P17096 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGA1P17096 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HMGA1P17096 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HMGA1P17096 RNU1-129P-201ENST00000384064 167 ntBASIC17.65■□□□□ 0.42
HMGA1P17096 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.65■□□□□ 0.42
HMGA1P17096 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
HMGA1P17096 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.65■□□□□ 0.42
HMGA1P17096 AC109322.1-201ENST00000524499 1264 ntBASIC17.65■□□□□ 0.42
HMGA1P17096 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HMGA1P17096 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.65■□□□□ 0.42
HMGA1P17096 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.65■□□□□ 0.42
HMGA1P17096 U1.21-201ENST00000580816 167 ntBASIC17.65■□□□□ 0.42
HMGA1P17096 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms