Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HMGB1P09429 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGB1P09429 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HMGB1P09429 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGB1P09429 AP002490.2-201ENST00000524791 560 ntBASIC20.23■□□□□ 0.83
HMGB1P09429 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGB1P09429 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGB1P09429 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
HMGB1P09429 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
HMGB1P09429 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGB1P09429 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HMGB1P09429 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.22■□□□□ 0.83
HMGB1P09429 AL021920.2-201ENST00000624828 1351 ntBASIC20.22■□□□□ 0.83
HMGB1P09429 AC011676.5-201ENST00000624864 2660 ntBASIC20.22■□□□□ 0.83
HMGB1P09429 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.22■□□□□ 0.83
HMGB1P09429 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGB1P09429 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.22■□□□□ 0.83
HMGB1P09429 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGB1P09429 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 DUX4L17-201ENST00000557360 1267 ntBASIC20.22■□□□□ 0.83
HMGB1P09429 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 AC021087.4-201ENST00000563761 564 ntBASIC20.22■□□□□ 0.83
HMGB1P09429 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGB1P09429 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGB1P09429 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 TERC-201ENST00000602385 541 ntBASIC20.22■□□□□ 0.83
HMGB1P09429 AC025062.2-201ENST00000605477 670 ntBASIC20.22■□□□□ 0.83
HMGB1P09429 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGB1P09429 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.22■□□□□ 0.83
HMGB1P09429 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGB1P09429 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
HMGB1P09429 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB1P09429 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
HMGB1P09429 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGB1P09429 LAGE3P1-201ENST00000425356 484 ntBASIC20.21■□□□□ 0.83
HMGB1P09429 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB1P09429 UNC93B7-201ENST00000509439 705 ntBASIC20.21■□□□□ 0.83
HMGB1P09429 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGB1P09429 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB1P09429 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB1P09429 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
HMGB1P09429 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGB1P09429 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGB1P09429 AC243591.1-201ENST00000452967 1364 ntBASIC20.21■□□□□ 0.83
HMGB1P09429 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
HMGB1P09429 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.83
HMGB1P09429 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.2■□□□□ 0.83
HMGB1P09429 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB1P09429 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB1P09429 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB1P09429 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGB1P09429 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms