Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.35□□□□□ -0.27
CXCL1P09341 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
CXCL1P09341 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC13.35□□□□□ -0.27
CXCL1P09341 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 MIR6786-201ENST00000616843 113 ntBASIC13.35□□□□□ -0.27
CXCL1P09341 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 AC026748.1-201ENST00000624349 3251 ntBASIC13.35□□□□□ -0.27
CXCL1P09341 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 AC036111.1-201ENST00000533973 1582 ntBASIC13.35□□□□□ -0.27
CXCL1P09341 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 FSCN1P1-201ENST00000568912 1481 ntBASIC13.35□□□□□ -0.27
CXCL1P09341 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.35□□□□□ -0.27
CXCL1P09341 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 ISG20-202ENST00000379224 540 ntTSL 3 BASIC13.34□□□□□ -0.27
CXCL1P09341 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 B3GAT3P1-201ENST00000471720 806 ntBASIC13.34□□□□□ -0.27
CXCL1P09341 FDX2-207ENST00000494368 584 ntTSL 4 BASIC13.34□□□□□ -0.27
CXCL1P09341 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 AC233263.1-201ENST00000578059 224 ntBASIC13.34□□□□□ -0.27
CXCL1P09341 MIR3180-4-201ENST00000582223 153 ntBASIC13.34□□□□□ -0.27
CXCL1P09341 AC073195.1-201ENST00000607241 877 ntBASIC13.34□□□□□ -0.27
CXCL1P09341 DGCR10-201ENST00000609839 495 ntBASIC13.34□□□□□ -0.27
CXCL1P09341 GXYLT1P5-201ENST00000614548 1189 ntBASIC13.34□□□□□ -0.27
CXCL1P09341 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.34□□□□□ -0.27
CXCL1P09341 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
CXCL1P09341 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.34□□□□□ -0.27
CXCL1P09341 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CXCL1P09341 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CXCL1P09341 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CXCL1P09341 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
CXCL1P09341 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.33□□□□□ -0.27
CXCL1P09341 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CXCL1P09341 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CXCL1P09341 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.33□□□□□ -0.27
CXCL1P09341 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CXCL1P09341 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.27
CXCL1P09341 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.33□□□□□ -0.28
CXCL1P09341 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC13.33□□□□□ -0.28
CXCL1P09341 AC063926.3-201ENST00000624734 5658 ntBASIC13.33□□□□□ -0.28
CXCL1P09341 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CXCL1P09341 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CXCL1P09341 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CXCL1P09341 CICP14-201ENST00000629111 2732 ntBASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms