Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 AC027612.4-201ENST00000605371 583 ntBASIC20.14■□□□□ 0.81
HLA-DOAP06340 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 AL355385.1-201ENST00000606123 409 ntBASIC20.14■□□□□ 0.81
HLA-DOAP06340 AC105339.1-204ENST00000636249 355 ntBASIC20.14■□□□□ 0.81
HLA-DOAP06340 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.14■□□□□ 0.81
HLA-DOAP06340 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HLA-DOAP06340 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HLA-DOAP06340 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
HLA-DOAP06340 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 AC004461.1-201ENST00000412461 403 ntBASIC20.12■□□□□ 0.81
HLA-DOAP06340 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HLA-DOAP06340 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.12■□□□□ 0.81
HLA-DOAP06340 AC012569.1-201ENST00000591191 1524 ntBASIC20.12■□□□□ 0.81
HLA-DOAP06340 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 AL355306.1-201ENST00000415580 579 ntBASIC20.11■□□□□ 0.81
HLA-DOAP06340 TSEN15P1-201ENST00000423257 515 ntBASIC20.11■□□□□ 0.81
HLA-DOAP06340 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 GATB-205ENST00000508611 605 ntTSL 2 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 FAM86C2P-203ENST00000528684 1004 ntBASIC20.11■□□□□ 0.81
HLA-DOAP06340 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 AC022145.2-201ENST00000598203 171 ntBASIC20.11■□□□□ 0.81
HLA-DOAP06340 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.11■□□□□ 0.81
HLA-DOAP06340 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 AL353732.1-201ENST00000569618 1459 ntBASIC20.11■□□□□ 0.81
HLA-DOAP06340 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HLA-DOAP06340 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.1■□□□□ 0.81
HLA-DOAP06340 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
HLA-DOAP06340 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
HLA-DOAP06340 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
HLA-DOAP06340 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
HLA-DOAP06340 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HLA-DOAP06340 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.1■□□□□ 0.81
HLA-DOAP06340 AL671277.1-201ENST00000429656 993 ntBASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms