Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 AC124947.2-201ENST00000547118 1133 ntBASIC12.96□□□□□ -0.33
HLA-DQA1P01909 NAT14-202ENST00000587400 416 ntTSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
HLA-DQA1P01909 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
HLA-DQA1P01909 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 ADM-208ENST00000534464 1640 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 RARRES2P10-201ENST00000564312 460 ntBASIC12.95□□□□□ -0.34
HLA-DQA1P01909 CABP2-204ENST00000636477 941 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 AC093525.9-201ENST00000624961 1746 ntBASIC12.95□□□□□ -0.34
HLA-DQA1P01909 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
HLA-DQA1P01909 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC006538.1-201ENST00000567905 1585 ntBASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AL161772.1-201ENST00000610494 4412 ntBASIC12.94□□□□□ -0.34
HLA-DQA1P01909 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC006058.4-201ENST00000624016 1670 ntBASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 ISG20-202ENST00000379224 540 ntTSL 3 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 F2R-202ENST00000505600 442 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC124016.1-201ENST00000609552 612 ntBASIC12.94□□□□□ -0.34
HLA-DQA1P01909 MMD2-204ENST00000612910 778 ntTSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 AC008622.2-201ENST00000617006 1229 ntBASIC12.94□□□□□ -0.34
HLA-DQA1P01909 ITM2C-210ENST00000620962 501 ntBASIC12.94□□□□□ -0.34
HLA-DQA1P01909 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HLA-DQA1P01909 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms