Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 AD000864.1-201ENST00000624076 2295 ntBASIC16.48■□□□□ 0.23
SEMA3DO95025 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SEMA3DO95025 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.48■□□□□ 0.23
SEMA3DO95025 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SEMA3DO95025 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.48■□□□□ 0.23
SEMA3DO95025 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.48■□□□□ 0.23
SEMA3DO95025 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.48■□□□□ 0.23
SEMA3DO95025 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 AP001269.4-201ENST00000609611 512 ntBASIC16.48■□□□□ 0.23
SEMA3DO95025 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.48■□□□□ 0.23
SEMA3DO95025 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.48■□□□□ 0.23
SEMA3DO95025 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SEMA3DO95025 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.48■□□□□ 0.23
SEMA3DO95025 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SEMA3DO95025 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 NFIC-211ENST00000641145 8399 ntBASIC16.47■□□□□ 0.23
SEMA3DO95025 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.47■□□□□ 0.23
SEMA3DO95025 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.47■□□□□ 0.23
SEMA3DO95025 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.47■□□□□ 0.23
SEMA3DO95025 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SEMA3DO95025 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.47■□□□□ 0.23
SEMA3DO95025 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.47■□□□□ 0.23
SEMA3DO95025 AC132008.2-207ENST00000454517 770 ntBASIC16.47■□□□□ 0.23
SEMA3DO95025 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.47■□□□□ 0.23
SEMA3DO95025 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.47■□□□□ 0.23
SEMA3DO95025 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.47■□□□□ 0.23
SEMA3DO95025 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.47■□□□□ 0.23
SEMA3DO95025 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
SEMA3DO95025 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SEMA3DO95025 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
SEMA3DO95025 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.46■□□□□ 0.23
SEMA3DO95025 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SEMA3DO95025 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SEMA3DO95025 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.46■□□□□ 0.23
SEMA3DO95025 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.46■□□□□ 0.23
SEMA3DO95025 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.46■□□□□ 0.23
SEMA3DO95025 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 TSPY19P-201ENST00000418461 509 ntBASIC16.46■□□□□ 0.23
SEMA3DO95025 TSPY18P-201ENST00000441642 509 ntBASIC16.46■□□□□ 0.23
SEMA3DO95025 PRYP5-201ENST00000451909 266 ntBASIC16.46■□□□□ 0.23
SEMA3DO95025 KRT18P31-201ENST00000506277 1292 ntBASIC16.46■□□□□ 0.23
SEMA3DO95025 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.46■□□□□ 0.23
SEMA3DO95025 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.46■□□□□ 0.23
SEMA3DO95025 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.46■□□□□ 0.23
SEMA3DO95025 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.46■□□□□ 0.23
SEMA3DO95025 AL139288.1-201ENST00000623748 933 ntBASIC16.46■□□□□ 0.23
SEMA3DO95025 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SEMA3DO95025 GPR89P-201ENST00000407924 1495 ntBASIC16.46■□□□□ 0.23
SEMA3DO95025 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.46■□□□□ 0.23
SEMA3DO95025 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
SEMA3DO95025 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms