Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
NPHP4O75161 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
NPHP4O75161 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC23.78■■□□□ 1.4
NPHP4O75161 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
NPHP4O75161 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.78■■□□□ 1.4
NPHP4O75161 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP4O75161 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
NPHP4O75161 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC23.77■■□□□ 1.4
NPHP4O75161 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC23.77■■□□□ 1.4
NPHP4O75161 ACTBP11-201ENST00000436287 1126 ntBASIC23.77■■□□□ 1.4
NPHP4O75161 NEU3-203ENST00000529024 581 ntTSL 3 BASIC23.77■■□□□ 1.4
NPHP4O75161 RAB35-202ENST00000534951 939 ntTSL 2 BASIC23.77■■□□□ 1.4
NPHP4O75161 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
NPHP4O75161 AC008735.3-201ENST00000596646 500 ntBASIC23.77■■□□□ 1.4
NPHP4O75161 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
NPHP4O75161 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
NPHP4O75161 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP4O75161 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP4O75161 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC23.76■■□□□ 1.39
NPHP4O75161 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC23.76■■□□□ 1.39
NPHP4O75161 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 AC044860.1-202ENST00000559481 777 ntBASIC23.76■■□□□ 1.39
NPHP4O75161 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC23.76■■□□□ 1.39
NPHP4O75161 TMEM261P1-201ENST00000604899 340 ntBASIC23.76■■□□□ 1.39
NPHP4O75161 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP4O75161 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
NPHP4O75161 AC131009.4-201ENST00000624048 1740 ntBASIC23.76■■□□□ 1.39
NPHP4O75161 LINC00896-202ENST00000609602 2128 ntBASIC23.76■■□□□ 1.39
NPHP4O75161 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC23.76■■□□□ 1.39
NPHP4O75161 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP4O75161 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP4O75161 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP4O75161 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
NPHP4O75161 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPHP4O75161 AC007389.4-201ENST00000454674 793 ntBASIC23.76■■□□□ 1.39
NPHP4O75161 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
NPHP4O75161 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC23.76■■□□□ 1.39
NPHP4O75161 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP4O75161 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC23.76■■□□□ 1.39
NPHP4O75161 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC23.76■■□□□ 1.39
NPHP4O75161 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC23.76■■□□□ 1.39
NPHP4O75161 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
NPHP4O75161 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC23.75■■□□□ 1.39
NPHP4O75161 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC23.75■■□□□ 1.39
NPHP4O75161 MYCLP2-201ENST00000449268 967 ntBASIC23.75■■□□□ 1.39
NPHP4O75161 CROCCP4-201ENST00000457096 498 ntBASIC23.75■■□□□ 1.39
NPHP4O75161 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC23.75■■□□□ 1.39
NPHP4O75161 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
NPHP4O75161 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPHP4O75161 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
NPHP4O75161 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC23.74■■□□□ 1.39
NPHP4O75161 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
NPHP4O75161 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC23.74■■□□□ 1.39
NPHP4O75161 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
NPHP4O75161 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 CDK2AP2P3-201ENST00000422476 372 ntBASIC23.74■■□□□ 1.39
NPHP4O75161 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC23.74■■□□□ 1.39
NPHP4O75161 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC23.74■■□□□ 1.39
NPHP4O75161 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC23.74■■□□□ 1.39
NPHP4O75161 5S_rRNA.22-201ENST00000614916 106 ntBASIC23.74■■□□□ 1.39
NPHP4O75161 LINC01451-201ENST00000623792 534 ntBASIC23.74■■□□□ 1.39
NPHP4O75161 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
NPHP4O75161 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
NPHP4O75161 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NPHP4O75161 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms