Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1BO60663 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1BO60663 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
LMX1BO60663 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1BO60663 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 KRT18P13-201ENST00000400056 1290 ntBASIC15.12■□□□□ 0.01
LMX1BO60663 POM121L3P-201ENST00000419331 1163 ntBASIC15.12■□□□□ 0.01
LMX1BO60663 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.12■□□□□ 0.01
LMX1BO60663 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1BO60663 AF238378.1-201ENST00000526806 358 ntBASIC15.12■□□□□ 0.01
LMX1BO60663 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.12■□□□□ 0.01
LMX1BO60663 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LMX1BO60663 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 AL773604.1-201ENST00000617417 272 ntBASIC15.12■□□□□ 0.01
LMX1BO60663 AF228730.7-201ENST00000641842 219 ntBASIC15.12■□□□□ 0.01
LMX1BO60663 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1BO60663 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1BO60663 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LMX1BO60663 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 AC097374.2-201ENST00000618617 1306 ntBASIC15.12■□□□□ 0.01
LMX1BO60663 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LMX1BO60663 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.12■□□□□ 0.01
LMX1BO60663 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1BO60663 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1BO60663 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LMX1BO60663 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 AC092068.3-201ENST00000587894 2016 ntBASIC15.11■□□□□ 0.01
LMX1BO60663 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
LMX1BO60663 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.11■□□□□ 0.01
LMX1BO60663 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.11■□□□□ 0.01
LMX1BO60663 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.11■□□□□ 0.01
LMX1BO60663 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.11■□□□□ 0.01
LMX1BO60663 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
LMX1BO60663 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LMX1BO60663 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1BO60663 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 AC092171.3-201ENST00000610122 2651 ntBASIC15.1■□□□□ 0.01
LMX1BO60663 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LMX1BO60663 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1BO60663 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LMX1BO60663 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.1■□□□□ 0.01
LMX1BO60663 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
LMX1BO60663 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.1■□□□□ 0.01
LMX1BO60663 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.1■□□□□ 0.01
LMX1BO60663 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms