Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
PROM1O43490 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
PROM1O43490 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.32■□□□□ 0.2
PROM1O43490 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.32■□□□□ 0.2
PROM1O43490 LINC00982-205ENST00000420957 435 ntBASIC16.32■□□□□ 0.2
PROM1O43490 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PROM1O43490 EMBP1-201ENST00000458200 901 ntBASIC16.32■□□□□ 0.2
PROM1O43490 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.32■□□□□ 0.2
PROM1O43490 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
PROM1O43490 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.32■□□□□ 0.2
PROM1O43490 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.32■□□□□ 0.2
PROM1O43490 AC080080.1-201ENST00000625121 2420 ntBASIC16.32■□□□□ 0.2
PROM1O43490 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 OR6D1P-203ENST00000641209 4860 ntBASIC16.32■□□□□ 0.2
PROM1O43490 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PROM1O43490 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PROM1O43490 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PROM1O43490 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PROM1O43490 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.31■□□□□ 0.2
PROM1O43490 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 EGFEM1P-202ENST00000431685 1563 ntBASIC16.31■□□□□ 0.2
PROM1O43490 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.31■□□□□ 0.2
PROM1O43490 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 AC004870.1-201ENST00000315132 882 ntBASIC16.31■□□□□ 0.2
PROM1O43490 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PROM1O43490 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.31■□□□□ 0.2
PROM1O43490 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PROM1O43490 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PROM1O43490 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 AC064862.7-201ENST00000604520 867 ntBASIC16.31■□□□□ 0.2
PROM1O43490 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.31■□□□□ 0.2
PROM1O43490 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.31■□□□□ 0.2
PROM1O43490 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.31■□□□□ 0.2
PROM1O43490 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PROM1O43490 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PROM1O43490 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PROM1O43490 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.3■□□□□ 0.2
PROM1O43490 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PROM1O43490 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.3■□□□□ 0.2
PROM1O43490 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.3■□□□□ 0.2
PROM1O43490 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.3■□□□□ 0.2
PROM1O43490 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PROM1O43490 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PROM1O43490 AP000347.1-202ENST00000435868 847 ntBASIC16.3■□□□□ 0.2
PROM1O43490 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms