Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.37■□□□□ 0.53
FOXN3O00409 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXN3O00409 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXN3O00409 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXN3O00409 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXN3O00409 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXN3O00409 PCDHA14-201ENST00000506751 2298 ntBASIC18.37■□□□□ 0.53
FOXN3O00409 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
FOXN3O00409 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXN3O00409 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
FOXN3O00409 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXN3O00409 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
FOXN3O00409 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 SART3-203ENST00000546611 1184 ntBASIC18.36■□□□□ 0.53
FOXN3O00409 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.36■□□□□ 0.53
FOXN3O00409 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.36■□□□□ 0.53
FOXN3O00409 REXO1L6P-202ENST00000619970 1078 ntBASIC18.36■□□□□ 0.53
FOXN3O00409 AL139288.1-201ENST00000623748 933 ntBASIC18.36■□□□□ 0.53
FOXN3O00409 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXN3O00409 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXN3O00409 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
FOXN3O00409 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
FOXN3O00409 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 AC092171.3-201ENST00000610122 2651 ntBASIC18.35■□□□□ 0.53
FOXN3O00409 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 AKR1C7P-201ENST00000305623 895 ntBASIC18.35■□□□□ 0.53
FOXN3O00409 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.35■□□□□ 0.53
FOXN3O00409 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
FOXN3O00409 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 DUX4L17-201ENST00000557360 1267 ntBASIC18.35■□□□□ 0.53
FOXN3O00409 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXN3O00409 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.35■□□□□ 0.53
FOXN3O00409 CLEC4GP1-201ENST00000596555 870 ntBASIC18.35■□□□□ 0.53
FOXN3O00409 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXN3O00409 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXN3O00409 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
FOXN3O00409 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXN3O00409 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
FOXN3O00409 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXN3O00409 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
FOXN3O00409 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
FOXN3O00409 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXN3O00409 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
FOXN3O00409 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXN3O00409 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXN3O00409 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms