Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AL118508.1-201ENST00000613502 2345 ntBASIC17.12■□□□□ 0.33
TREX1Q9NSU2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 AL139424.1-201ENST00000607572 797 ntBASIC17.11■□□□□ 0.33
TREX1Q9NSU2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 AL645728.1-201ENST00000366221 2101 ntBASIC17.11■□□□□ 0.33
TREX1Q9NSU2 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.11■□□□□ 0.33
TREX1Q9NSU2 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 CLEC4GP1-201ENST00000596555 870 ntBASIC17.1■□□□□ 0.33
TREX1Q9NSU2 TERC-201ENST00000602385 541 ntBASIC17.1■□□□□ 0.33
TREX1Q9NSU2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 AC012313.10-201ENST00000623509 926 ntBASIC17.1■□□□□ 0.33
TREX1Q9NSU2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 PCDHA14-201ENST00000506751 2298 ntBASIC17.1■□□□□ 0.33
TREX1Q9NSU2 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 AC243591.1-201ENST00000452967 1364 ntBASIC17.1■□□□□ 0.33
TREX1Q9NSU2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TREX1Q9NSU2 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 SAPCD2P3-201ENST00000455031 850 ntBASIC17.09■□□□□ 0.33
TREX1Q9NSU2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 AF238378.1-201ENST00000526806 358 ntBASIC17.09■□□□□ 0.33
TREX1Q9NSU2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 MTDHP4-201ENST00000600287 670 ntBASIC17.09■□□□□ 0.33
TREX1Q9NSU2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TREX1Q9NSU2 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TREX1Q9NSU2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms