Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AP002414.1-201ENST00000391405 1147 ntBASIC18.31■□□□□ 0.52
CISHQ9NSE2 FDX1P1-201ENST00000449115 551 ntBASIC18.31■□□□□ 0.52
CISHQ9NSE2 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AL356488.2-201ENST00000602755 427 ntBASIC18.31■□□□□ 0.52
CISHQ9NSE2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AL805961.1-202ENST00000641562 540 ntBASIC18.31■□□□□ 0.52
CISHQ9NSE2 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CISHQ9NSE2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.31■□□□□ 0.52
CISHQ9NSE2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 AC092068.3-201ENST00000587894 2016 ntBASIC18.3■□□□□ 0.52
CISHQ9NSE2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 RPS15P9-201ENST00000494093 319 ntBASIC18.3■□□□□ 0.52
CISHQ9NSE2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 MIR1199-201ENST00000621445 119 ntBASIC18.3■□□□□ 0.52
CISHQ9NSE2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CISHQ9NSE2 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CISHQ9NSE2 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 AC022211.2-201ENST00000585075 2527 ntBASIC18.29■□□□□ 0.52
CISHQ9NSE2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 AC026396.1-201ENST00000419388 421 ntBASIC18.29■□□□□ 0.52
CISHQ9NSE2 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 TERC-201ENST00000602385 541 ntBASIC18.29■□□□□ 0.52
CISHQ9NSE2 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CISHQ9NSE2 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 PI4KAP1-204ENST00000612579 1703 ntBASIC18.29■□□□□ 0.52
CISHQ9NSE2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CISHQ9NSE2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CISHQ9NSE2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.28■□□□□ 0.52
CISHQ9NSE2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CISHQ9NSE2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CISHQ9NSE2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CISHQ9NSE2 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CISHQ9NSE2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CISHQ9NSE2 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CISHQ9NSE2 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.28■□□□□ 0.52
CISHQ9NSE2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.28■□□□□ 0.52
CISHQ9NSE2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms