Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.19■□□□□ 0.34
TM9SF3Q9HD45 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 OR6D1P-202ENST00000641007 5290 ntBASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 RHOQP3-201ENST00000437982 621 ntBASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 RFPL4AP1-201ENST00000530883 850 ntBASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 AL031432.2-201ENST00000566714 459 ntBASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 AL928711.1-201ENST00000570165 459 ntBASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 LINC02084-201ENST00000606069 1096 ntBASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.18■□□□□ 0.34
TM9SF3Q9HD45 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 AC012317.2-201ENST00000623305 2251 ntBASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 CYMP-203ENST00000474680 1263 ntBASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 AC025580.3-201ENST00000617932 1424 ntBASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
TM9SF3Q9HD45 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 PI4KAP1-204ENST00000612579 1703 ntBASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.16■□□□□ 0.34
TM9SF3Q9HD45 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms