Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 U91328.1-201ENST00000437528 223 ntBASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SHANK3Q9BYB0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 PIN1P1-201ENST00000412108 996 ntBASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 ATP5G2P4-201ENST00000442175 420 ntBASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK3Q9BYB0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 SLC25A6P5-201ENST00000435663 894 ntBASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK3Q9BYB0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 AC018529.1-201ENST00000613063 361 ntBASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 KRT8P49-201ENST00000604166 1432 ntBASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK3Q9BYB0 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SHANK3Q9BYB0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms