Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 BX284668.4-201ENST00000453917 508 ntBASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 PPOX-204ENST00000462866 473 ntTSL 5 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 AC104784.1-201ENST00000473096 294 ntBASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 RRP7BP-205ENST00000566851 833 ntBASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 MIR5189-201ENST00000577370 114 ntBASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 U1.21-201ENST00000580816 167 ntBASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.13■□□□□ 0.33
COL25A1Q9BXS0 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 FTLP10-202ENST00000505798 471 ntBASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 AL008638.5-201ENST00000623814 1298 ntBASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL25A1Q9BXS0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 TDH-203ENST00000531764 1110 ntBASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 DUX4L45-201ENST00000566406 1057 ntBASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 MIR6756-201ENST00000616240 63 ntBASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL25A1Q9BXS0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.1■□□□□ 0.33
COL25A1Q9BXS0 AC104596.2-201ENST00000512793 793 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms